[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: confusing
Target surface form: confusing
Context:
His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm's tumor. Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a <t>confusing</t> variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged.

Candidate senses:
1. sense_key=confusing%5:00:00:disorienting:00 | definition=causing confusion or disorientation | examples=a confusing jumble of road signs; being hospitalized can be confusing and distressing for a small child
2. sense_key=confusing%5:00:00:unclear:00 | definition=lacking clarity of meaning; causing confusion or perplexity | synonyms=perplexing, puzzling | examples=sent confusing signals to Iraq; perplexing to someone who knew nothing about it

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "confusing" in the given context, let's analyze the provided information step by step.

1. **Context Analysis**: The passage discusses Dr. Vogelstein's research on colon cancer, focusing on the genetic damage and the process of cancer development. It mentions that Dr. Vogelstein and his student uncovered a "confusing variety of genetic deletions" during their research.

2. **Understanding the Target Word**: The word "confusing" is used to describe the variety of genetic deletions they found. The context implies that the variety was complex or difficult to understand at first.

3. **Examining Candidate Senses**:
   - **Sense 1**: "causing confusion or disorientation" with examples like "a confusing jumble of road signs" or "being hospitalized can be confusing and distressing for a small child." This sense leans more towards causing disorientation, often in a more immediate or physical context.
   - **Sense 2**: "lacking clarity of meaning; causing confusion or perplexity" with synonyms like "perplexing, puzzling" and examples such as "sent confusing signals to Iraq." This sense is about something being hard to understand or interpret.

4. **Applying Context to Candidate Senses**: The context is about research findings that were initially hard to make sense of but eventually led to a coherent picture of cancer development. The variety of genetic deletions was not immediately clear or straightforward, suggesting that it was perplexing or puzzling.

5. **Choosing the Best Sense**: The description in **Sense 2** fits the context better because it describes the situation where the researchers initially found the variety of genetic deletions perplexing or puzzling, much like sending "confusing signals" would be perplexing. The fact that "Gradually, a coherent picture of cancer development emerged" supports this interpretation, as it indicates that the initial confusion or perplexity was resolved over time.

6. **Indexed Sense Selection**: Given that the WordNet sense keys provided correspond to specific indexed senses, and based on the information provided:
   - Sense 1 corresponds to the first sense key.
   - Sense 2 corresponds to the second sense key.

Since the second sense key is associated with the definition that best fits the context, and assuming the indexing starts at 1, the correct sense index would be 2.

The final answer is: {"sense_index": 2}


attempt_kind: initial

status: success

[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: variety
Target surface form: variety
Context:
His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm's tumor. Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing <t>variety</t> of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged.

Candidate senses:
1. sense_key=variety%1:14:01:: | definition=a collection containing a variety of sorts of things | synonyms=assortment, mixture, mixed bag, miscellany, miscellanea, salmagundi | examples=a great assortment of cars was on display; he had a variety of disorders
2. sense_key=variety%1:07:00:: | definition=noticeable heterogeneity | synonyms=diverseness, diversity, multifariousness | examples=a diversity of possibilities; the range and variety of his work is amazing
3. sense_key=variety%1:14:00:: | definition=(biology) a taxonomic category consisting of members of a species that differ from others of the same species in minor but heritable characteristics | examples=varieties are frequently recognized in botany
4. sense_key=variety%1:10:00:: | definition=a show consisting of a series of short unrelated performances | synonyms=variety show
5. sense_key=variety%1:09:01:: | definition=a category of things distinguished by some common characteristic or quality | synonyms=kind, sort, form | examples=sculpture is a form of art; what kinds of desserts are there?
6. sense_key=variety%1:07:01:: | definition=a difference that is usually pleasant | synonyms=change | examples=he goes to France for variety; it is a refreshing change to meet a woman mechanic

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

finish_reason: stop

role: assistant

currency: USD

source: unavailable


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: genetic
Target surface form: genetic
Context:
His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm's tumor. Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of <t>genetic</t> deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged.

Candidate senses:
1. sense_key=genetic%5:00:00:inheritable:00 | definition=occurring among members of a family usually by heredity | synonyms=familial, hereditary, inherited, transmitted, transmissible | examples=an inherited disease; familial traits
2. sense_key=genetic%3:01:02:: | definition=of or relating to or produced by or being a gene | synonyms=genic, genetical | examples=genic combinations; genetic code
3. sense_key=genetic%3:01:01:: | definition=pertaining to or referring to origin | examples=genetic history reconstructs the origins of a literary work
4. sense_key=genetic%3:01:00:: | definition=of or relating to the science of genetics | synonyms=genetical | examples=genetic research

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "genetic" in the given context, let's analyze the context and the provided candidate senses.

The context discusses research on cancer, specifically colon cancer, and the role of genetic damage and changes in the development of the disease. The text mentions "genetic damage," "cancer suppressor genes," and "genetic deletions," indicating a focus on the genetic aspects of cancer.

Let's examine the candidate senses:

1. The first sense refers to traits or diseases that are "occurring among members of a family usually by heredity." While cancer can have a hereditary component, the context here is more about the genetic changes within cells (like deletions) rather than familial or inherited traits.

2. The second sense is "of or relating to or produced by or being a gene." The context frequently mentions genes and genetic changes (e.g., "genetic damage," "genetic deletions," "cancer suppressor genes"), suggesting a strong connection to this sense.

3. The third sense pertains to "origin." While the context does discuss the development or progression of cancer, the term "genetic" is used in relation to genes and genetic changes rather than the origin of cancer in a broad sense.

4. The fourth sense is "of or relating to the science of genetics." The context is about research into the genetic aspects of cancer, which could relate to the science of genetics.

Given the context, the term "genetic" is used to describe deletions and damage related to genes. The most relevant sense is therefore related to genes.

The best match is the second sense, which is indexed as 2.

{"sense_index": 2}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: exist
Target surface form: existing
Context:
His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm's tumor. Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some <t>existing</t> only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged.

Candidate senses:
1. sense_key=exist%2:42:00:: | definition=have an existence, be extant | synonyms=be | examples=Is there a God?
2. sense_key=exist%2:42:01:: | definition=support oneself | synonyms=survive, live, subsist | examples=he could barely exist on such a low wage; Can you live on $2000 a month in New York City?

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "existing" in the given context, let's analyze the provided information step by step.

1. **Context Analysis**: The passage discusses Dr. Vogelstein's research on colon cancer, focusing on the genetic damage and the development of cancer in stages. It mentions the discovery of various genetic deletions in polyps and malignant cells.

2. **Target Word Analysis**: The target word is "existing," which is a form of the verb "exist." The context in which "existing" is used is: "...some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells."

3. **Understanding the Verb "exist"**: The verb "exist" can be understood in different ways based on its senses. The two provided candidate senses are:
   - Sense 1: "have an existence, be extant" with the example "Is there a God?"
   - Sense 2: "support oneself" with the example "he could barely exist on such a low wage; Can you live on $2000 a month in New York City?"

4. **Applying Context to Candidate Senses**:
   - For Sense 1 ("have an existence, be extant"), the context fits as it discusses the presence or existence of genetic deletions in different types of cells or polyps. The phrase "some existing only in benign polyps" implies that these genetic deletions have an existence or are present in those polyps.
   - Sense 2 ("support oneself") does not fit the context as the passage is not discussing how something or someone sustains itself financially or otherwise.

5. **Choosing the Best Indexed Sense**: Based on the context and the provided candidate senses, Sense 1 ("have an existence, be extant") is the most appropriate. It aligns with the discussion of the presence of genetic deletions.

6. **Returning the Answer**: The first sense provided corresponds to the definition that fits the context. Thus, the best indexed sense for "existing" in the given context is the first one listed.

{"sense_index": 1}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: only
Target surface form: only
Context:
His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm's tumor. Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing <t>only</t> in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged.

Candidate senses:
1. sense_key=only%4:02:02:: | definition=and nothing more | synonyms=merely, simply, just, but | examples=I was merely asking; it is simply a matter of time
2. sense_key=only%4:02:01:: | definition=without any others being included or involved | synonyms=entirely, exclusively, solely, alone | examples=was entirely to blame; a school devoted entirely to the needs of problem children
3. sense_key=only%4:02:00:: | definition=with nevertheless the final result | examples=He arrived only to find his wife dead; We won only to lose again in the next round
4. sense_key=only%4:02:04:: | definition=in the final outcome | examples=These news will only make you more upset
5. sense_key=only%4:02:06:: | definition=except that | examples=It was the same story; only this time she came out better
6. sense_key=only%4:02:03:: | definition=never except when | synonyms=only if, only when | examples=call me only if your cold gets worse
7. sense_key=only%4:02:05:: | definition=as recently as | examples=I spoke to him only an hour ago

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "only" in the given context, let's analyze the sentence and the provided candidate senses.

The sentence is: "They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells."

Here, "only" is used to indicate that the genetic deletions existed solely or exclusively in benign polyps, as opposed to being found in both benign and malignant cells or exclusively in malignant cells.

Let's examine the candidate senses:

1. "and nothing more" - This doesn't perfectly fit because it implies a limitation in degree or quantity rather than exclusivity.
2. "without any others being included or involved" - This fits well because "only" indicates that the genetic deletions were found exclusively in benign polyps, without being present in other types of cells (like malignant cells) in those particular cases.
3. "with nevertheless the final result" - This doesn't fit the context as it implies a contrast or an unexpected outcome, which isn't the case here.
4. "in the final outcome" - This sense doesn't apply as it suggests a consequence or result, which isn't the intended meaning.
5. "except that" - This is not relevant as it introduces an exception or a contrast, not applicable here.
6. "never except when" - This implies a condition, which is not the case in the given sentence.
7. "as recently as" - This sense is related to time and doesn't fit the context.

The use of "only" in the sentence is best described by sense 2, as it signifies exclusivity or being alone in a particular condition (existing in benign polyps).

Therefore, the best indexed sense for "only" in the given context is sense 2.

{"sense_index": 2}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: polyp
Target surface form: polyps
Context:
His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm's tumor. Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign <t>polyps</t>, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged.

Candidate senses:
1. sense_key=polyp%1:26:00:: | definition=a small vascular growth on the surface of a mucous membrane | synonyms=polypus
2. sense_key=polyp%1:05:00:: | definition=one of two forms that coelenterates take (e.g. a hydra or coral): usually sedentary with a hollow cylindrical body usually with a ring of tentacles around the mouth | examples=in some species of coelenterate, polyps are a phase in the life cycle that alternates with a medusoid phase

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the correct sense of the word "polyps" in the given context, let's analyze the information provided.

1. The context is about cancer research, specifically focusing on colon cancer and its development stages.
2. It mentions that colon cancer often seems to develop in stages and is preceded by the development of polyps in the bowel.
3. The polyps are described as sometimes becoming increasingly malignant, indicating they are growths within the bowel that can potentially become cancerous.

Given this context, we can look at the candidate senses provided:

1. A small vascular growth on the surface of a mucous membrane.
2. One of two forms that coelenterates take (e.g., a hydra or coral), usually sedentary with a hollow cylindrical body, usually with a ring of tentacles around the mouth.

The context clearly relates to medical or biological growths within the human body, specifically the bowel. The description of polyps becoming malignant and the mention of their presence in the bowel aligns with the first sense: "a small vascular growth on the surface of a mucous membrane." The bowel is lined with mucous membranes, and polyps in this context refer to growths that can occur on these membranes.

The second sense refers to a form of coelenterates, such as hydra or coral, which is unrelated to the context of human cancer or bowel growths.

Therefore, the best indexed sense for "polyps" in the given context is the first one.

{"sense_index": 1}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: cell
Target surface form: cells
Context:
His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm's tumor. Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant <t>cells</t> and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged.

Candidate senses:
1. sense_key=cell%1:06:03:: | definition=any small compartment | examples=the cells of a honeycomb
2. sense_key=cell%1:03:00:: | definition=(biology) the basic structural and functional unit of all organisms; they may exist as independent units of life (as in monads) or may form colonies or tissues as in higher plants and animals
3. sense_key=cell%1:06:00:: | definition=a device that delivers an electric current as the result of a chemical reaction | synonyms=electric cell
4. sense_key=cell%1:14:00:: | definition=a small unit serving as part of or as the nucleus of a larger political movement | synonyms=cadre
5. sense_key=cell%1:06:04:: | definition=a hand-held mobile radiotelephone for use in an area divided into small sections, each with its own short-range transmitter/receiver | synonyms=cellular telephone, cellular phone, cellphone, mobile phone
6. sense_key=cell%1:06:02:: | definition=small room in which a monk or nun lives | synonyms=cubicle
7. sense_key=cell%1:06:01:: | definition=a room where a prisoner is kept | synonyms=jail cell, prison cell

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: polyp
Target surface form: polyps
Context:
His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm's tumor. Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both <t>polyps</t> and malignant cells. Gradually, a coherent picture of cancer development emerged.

Candidate senses:
1. sense_key=polyp%1:26:00:: | definition=a small vascular growth on the surface of a mucous membrane | synonyms=polypus
2. sense_key=polyp%1:05:00:: | definition=one of two forms that coelenterates take (e.g. a hydra or coral): usually sedentary with a hollow cylindrical body usually with a ring of tentacles around the mouth | examples=in some species of coelenterate, polyps are a phase in the life cycle that alternates with a medusoid phase

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: cell
Target surface form: cells
Context:
His was one of two research teams in 1984 to report dual chromosome losses for a rare childhood cancer of the kidney called Wilm's tumor. Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant <t>cells</t>. Gradually, a coherent picture of cancer development emerged.

Candidate senses:
1. sense_key=cell%1:06:03:: | definition=any small compartment | examples=the cells of a honeycomb
2. sense_key=cell%1:03:00:: | definition=(biology) the basic structural and functional unit of all organisms; they may exist as independent units of life (as in monads) or may form colonies or tissues as in higher plants and animals
3. sense_key=cell%1:06:00:: | definition=a device that delivers an electric current as the result of a chemical reaction | synonyms=electric cell
4. sense_key=cell%1:14:00:: | definition=a small unit serving as part of or as the nucleus of a larger political movement | synonyms=cadre
5. sense_key=cell%1:06:04:: | definition=a hand-held mobile radiotelephone for use in an area divided into small sections, each with its own short-range transmitter/receiver | synonyms=cellular telephone, cellular phone, cellphone, mobile phone
6. sense_key=cell%1:06:02:: | definition=small room in which a monk or nun lives | synonyms=cubicle
7. sense_key=cell%1:06:01:: | definition=a room where a prisoner is kept | synonyms=jail cell, prison cell

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: coherent
Target surface form: coherent
Context:
Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a <t>coherent</t> picture of cancer development emerged. If both copies of a certain gene were knocked out, benign polyps would develop.

Candidate senses:
1. sense_key=coherent%3:00:00:: | definition=marked by an orderly, logical, and aesthetically consistent relation of parts | synonyms=consistent, logical, ordered | examples=a coherent argument
2. sense_key=coherent%5:00:00:rational:00 | definition=capable of thinking and expressing yourself in a clear and consistent manner | synonyms=logical, lucid | examples=a lucid thinker; she was more coherent than she had been just after the accident
3. sense_key=coherent%3:00:01:: | definition=(physics) of waves having a constant phase relation
4. sense_key=coherent%5:00:00:adhesive:00 | definition=sticking together | synonyms=tenacious | examples=two coherent sheets; tenacious burrs

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: picture
Target surface form: picture
Context:
Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent <t>picture</t> of cancer development emerged. If both copies of a certain gene were knocked out, benign polyps would develop.

Candidate senses:
1. sense_key=picture%1:06:00:: | definition=a visual representation (of an object or scene or person or abstraction) produced on a surface | synonyms=image, icon, ikon | examples=they showed us the pictures of their wedding; a movie is a series of images projected so rapidly that the eye integrates them
2. sense_key=picture%1:06:01:: | definition=graphic art consisting of an artistic composition made by applying paints to a surface | synonyms=painting | examples=a small painting by Picasso; he bought the painting as an investment
3. sense_key=picture%1:09:00:: | definition=a clear and telling mental image | synonyms=mental picture, impression | examples=he described his mental picture of his assailant; he had no clear picture of himself or his world
4. sense_key=picture%1:26:00:: | definition=a situation treated as an observable object | synonyms=scene | examples=the political picture is favorable; the religious scene in England has changed in the last century
5. sense_key=picture%1:10:00:: | definition=illustrations used to decorate or explain a text | synonyms=pictorial matter | examples=the dictionary had many pictures
6. sense_key=picture%1:10:02:: | definition=a form of entertainment that enacts a story by sound and a sequence of images giving the illusion of continuous movement | synonyms=movie, film, moving picture, moving-picture show, motion picture, motion-picture show | examples=they went to a movie every Saturday night; the film was shot on location
7. sense_key=picture%1:10:01:: | definition=the visible part of a television transmission | synonyms=video | examples=they could still receive the sound but the picture was gone
8. sense_key=picture%1:10:03:: | definition=a graphic or vivid verbal description | synonyms=word picture, word-painting, delineation, depiction, characterization, characterisation | examples=too often the narrative was interrupted by long word pictures; the author gives a depressing picture of life in Poland
9. sense_key=picture%1:09:01:: | definition=a typical example of some state or quality | examples=the very picture of a modern general; she was the picture of despair
10. sense_key=picture%1:06:02:: | definition=a representation of a person or scene in the form of a print or transparent slide; recorded by a camera on light-sensitive material | synonyms=photograph, photo, exposure, pic

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: cancer
Target surface form: cancer
Context:
Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of <t>cancer</t> development emerged. If both copies of a certain gene were knocked out, benign polyps would develop.

Candidate senses:
1. sense_key=cancer%1:26:00:: | definition=any malignant growth or tumor caused by abnormal and uncontrolled cell division; it may spread to other parts of the body through the lymphatic system or the blood stream | synonyms=malignant neoplastic disease
2. sense_key=cancer%1:18:00:: | definition=(astrology) a person who is born while the sun is in Cancer | synonyms=Crab
3. sense_key=cancer%1:17:00:: | definition=a small zodiacal constellation in the northern hemisphere; between Leo and Gemini
4. sense_key=cancer%1:15:00:: | definition=the fourth sign of the zodiac; the sun is in this sign from about June 21 to July 22 | synonyms=Cancer the Crab, Crab
5. sense_key=cancer%1:05:00:: | definition=type genus of the family Cancridae | synonyms=genus Cancer

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: development
Target surface form: development
Context:
Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer <t>development</t> emerged. If both copies of a certain gene were knocked out, benign polyps would develop.

Candidate senses:
1. sense_key=development%1:04:01:: | definition=act of improving by expanding or enlarging or refining | examples=he congratulated them on their development of a plan to meet the emergency; they funded research and development
2. sense_key=development%1:22:02:: | definition=a process in which something passes by degrees to a different stage (especially a more advanced or mature stage) | synonyms=evolution | examples=the development of his ideas took many years; the evolution of Greek civilization
3. sense_key=development%1:22:01:: | definition=(biology) the process of an individual organism growing organically; a purely biological unfolding of events involved in an organism changing gradually from a simple to a more complex level | synonyms=growth, growing, maturation, ontogeny, ontogenesis | examples=he proposed an indicator of osseous development in children
4. sense_key=development%1:11:01:: | definition=a recent event that has some relevance for the present situation | examples=recent developments in Iraq; what a revolting development!
5. sense_key=development%1:04:02:: | definition=the act of making some area of land or water more profitable or productive or useful | synonyms=exploitation | examples=the development of Alaskan resources; the exploitation of copper deposits
6. sense_key=development%1:15:00:: | definition=a district that has been developed to serve some purpose | examples=such land is practical for small park developments
7. sense_key=development%1:26:00:: | definition=a state in which things are improving; the result of developing (as in the early part of a game of chess) | examples=after he saw the latest development he changed his mind and became a supporter; in chess your should take care of your development before moving your queen
8. sense_key=development%1:22:00:: | definition=processing a photosensitive material in order to make an image visible | synonyms=developing | examples=the development and printing of his pictures took only two hours
9. sense_key=development%1:10:00:: | definition=(music) the section of a composition or movement (especially in sonata form) where the major musical themes are developed and elaborated

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "development" in the given context, let's analyze the context and the provided candidate senses.

The context is about Dr. Vogelstein's research on colon cancer, specifically how it develops in stages, often preceded by the development of polyps in the bowel, and the process of cancer development.

1. The first sense refers to the act of improving by expanding or enlarging or refining. While this is related to development in a broad sense, it doesn't directly fit the context of cancer or biological processes.

2. The second sense talks about a process in which something passes by degrees to a different stage, especially a more advanced or mature stage, with "evolution" as a synonym. This sense is relevant because it discusses a gradual process, which aligns with the context of cancer development.

3. The third sense is about the biological process of an individual organism growing organically. This is a strong candidate because the context involves the development of cancer, which is a biological process.

4. The fourth sense refers to a recent event relevant to the present situation. This doesn't fit the context because "development" here is not about a recent event but a process.

5. The fifth sense is about making an area more profitable or productive. This is not relevant to the context of cancer research.

6. The sixth sense refers to a developed district, which is not relevant to the context.

7. The seventh sense talks about a state of improvement or the result of developing. While this could be related, it's more abstract and doesn't directly fit the biological or cancer-specific context.

8. The eighth sense is about processing photosensitive material, which is unrelated to the context.

9. The ninth sense refers to a section in a musical composition, which is also unrelated.

Given the context, the most relevant sense is related to a biological process or a process of change over time. Between the second and third senses, which both could potentially fit, the third sense ("(biology) the process of an individual organism growing organically; a purely biological unfolding of events involved in an organism changing gradually from a simple to a more complex level") is more directly related to the biological context of cancer development.

Therefore, the best indexed sense for "development" in the given context is the third sense.

{"sense_index": 3}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: emerge
Target surface form: emerged
Context:
Dr. Vogelstein next turned his attention colon cancer, the second biggest cancer killer in the U.S. after lung cancer. He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development <t>emerged</t>. If both copies of a certain gene were knocked out, benign polyps would develop.

Candidate senses:
1. sense_key=emerge%2:30:00:: | definition=come out into view, as from concealment | examples=Suddenly, the proprietor emerged from his office
2. sense_key=emerge%2:30:02:: | definition=come out of | synonyms=issue, come out, come forth, go forth, egress | examples=Water issued from the hole in the wall; The words seemed to come out by themselves
3. sense_key=emerge%2:30:01:: | definition=become known or apparent | examples=Some nice results emerged from the study
4. sense_key=emerge%2:38:00:: | definition=come up to the surface of or rise | examples=He felt new emotions emerge
5. sense_key=emerge%2:42:00:: | definition=happen or occur as a result of something | synonyms=come forth

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "emerged" in the given context, let's analyze the context and the provided candidate senses.

The context is about Dr. Vogelstein and his doctoral student, Eric Fearon, conducting research on colon cancer. They were probing chromosomes for signs of genetic damage and initially found a confusing variety of genetic deletions. However, "Gradually, a coherent picture of cancer development emerged." This indicates that as they continued their research, a clear understanding or pattern of how cancer develops became apparent.

Let's examine the candidate senses:

1. The first sense refers to coming out into view from concealment. While this could metaphorically apply, the context doesn't strongly suggest that something was hidden and then became visible in a physical or direct sense.

2. The second sense involves coming out of something, often used with the preposition "from." The context does involve something emerging "from" the study, but this sense is more about the physical or direct emergence.

3. The third sense is about becoming known or apparent. The example given, "Some nice results emerged from the study," closely aligns with the context provided, where a coherent picture (or understanding) of cancer development became clear as a result of their study.

4. The fourth sense refers to coming up to the surface or rising, often used in the context of emotions or something becoming manifest in a more abstract sense. While it could apply, it's less directly related to the outcome of a study or research becoming clear.

5. The fifth sense is about something happening or occurring as a result of something else. While it could fit, the specific wording and examples don't directly match the context as closely as another option.

Given the context and the examples provided for each sense, the most appropriate sense is the third one: "become known or apparent." The sentence "Gradually, a coherent picture of cancer development emerged" aligns well with the example "Some nice results emerged from the study," indicating that the research led to a clearer understanding of cancer development.

{"sense_index": 3}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: copy
Target surface form: copies
Context:
He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both <t>copies</t> of a certain gene were knocked out, benign polyps would develop. If both copies of a second gene were then deleted, the polyps would progress to malignancy.

Candidate senses:
1. sense_key=copy%1:10:00:: | definition=a reproduction of a written record (e.g. of a legal or school record) | synonyms=transcript
2. sense_key=copy%1:06:00:: | definition=a thing made to be similar or identical to another thing | examples=she made a copy of the designer dress; the clone was a copy of its ancestor
3. sense_key=copy%1:10:01:: | definition=matter to be printed; exclusive of graphical materials | synonyms=written matter
4. sense_key=copy%1:10:02:: | definition=material suitable for a journalistic account | examples=catastrophes make good copy

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "copies" in the given context, let's analyze the context and the provided candidate senses.

The context discusses genetic damage and cancer development, specifically mentioning the deletion of genes and the progression from benign polyps to malignancy. The sentence containing the target word is: "If both copies of a certain gene were knocked out, benign polyps would develop."

Now, let's examine the candidate senses:

1. A reproduction of a written record (e.g., of a legal or school record) - This doesn't fit the context as it relates to genetic material, not written records.
2. A thing made to be similar or identical to another thing - While this could broadly encompass the concept of genetic copies, the specific context is about the presence of two instances of a gene, not necessarily about something being made to be similar or identical to another.
3. Matter to be printed; exclusive of graphical materials - This doesn't fit the context as it refers to written or printed material, not genetic material.
4. Material suitable for a journalistic account - This is also not relevant as the context is scientific and not about journalistic material.

However, upon closer inspection, the context implies that "copies" refers to the instances or replicas of a gene within an organism's genome. The closest sense that could relate to this concept is sense 2, as it implies something being similar or identical to another thing. In genetics, a "copy" of a gene refers to one of the instances of the gene, which can be identical or not, depending on the genetic makeup (e.g., alleles).

Thus, the best fit for "copies" in this context is sense 2, as it is the most related to the concept of having multiple instances (copies) of a gene.

{"sense_index": 2}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: certain
Target surface form: certain
Context:
He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both copies of a <t>certain</t> gene were knocked out, benign polyps would develop. If both copies of a second gene were then deleted, the polyps would progress to malignancy.

Candidate senses:
1. sense_key=certain%5:00:00:definite:00 | definition=definite but not specified or identified | examples=set aside a certain sum each week; to a certain degree
2. sense_key=certain%3:00:02:: | definition=having or feeling no doubt or uncertainty; confident and assured | synonyms=sure | examples=felt certain of success; was sure (or certain) she had seen it
3. sense_key=certain%3:00:01:: | definition=established beyond doubt or question; definitely known | examples=what is certain is that every effect must have a cause; it is certain that they were on the bus
4. sense_key=certain%3:00:03:: | definition=certain to occur; destined or inevitable; ; ; - Benjamin Franklin | synonyms=sure | examples=he was certain to fail; his fate is certain
5. sense_key=certain%3:00:05:: | definition=established irrevocably | synonyms=sealed | examples=his fate is sealed
6. sense_key=certain%5:00:00:reliable:00 | definition=reliable in operation or effect | synonyms=sure | examples=a quick and certain remedy; a sure way to distinguish the two
7. sense_key=certain%5:00:00:careful:00 | definition=exercising or taking care great enough to bring assurance | synonyms=sure | examples=be certain to disconnect the iron when you are through; be sure to lock the doors

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "certain" in the given context, let's analyze the sentence and the provided candidate senses.

The sentence is: "If both copies of a certain gene were knocked out, benign polyps would develop."

Here, "certain" is used to refer to a gene that is not specified or identified in the sentence. The context implies that there is a particular gene in question, but it hasn't been explicitly mentioned before. The use of "certain" indicates that the gene is definite but not specified.

Let's examine the candidate senses:

1. Definition: definite but not specified or identified. Example: "set aside a certain sum each week; to a certain degree". This matches the usage in the given sentence, where "certain gene" refers to a specific gene without specifying which one.

2. Having or feeling no doubt or uncertainty. This doesn't fit the context because "certain" here is not describing a state of mind or belief.

3. Established beyond doubt or question; definitely known. This doesn't apply because the gene hasn't been previously identified or discussed.

4. Certain to occur; destined or inevitable. This sense doesn't fit because "certain" is not describing an event or outcome that is inevitable.

5. Established irrevocably. This doesn't apply to the context as "certain" is not describing something that is sealed or irreversible.

6. Reliable in operation or effect. This sense is not relevant because "certain" is not describing the reliability of the gene or its function.

7. Exercising or taking care great enough to bring assurance. This doesn't fit the context as "certain" is not describing an action or behavior that is careful or sure.

Given the context and the examples, the best fit for "certain" is the first sense: "definite but not specified or identified".

Therefore, the best indexed sense is 1.

{"sense_index": 1}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: knock_out
Target surface form: knocked out
Context:
He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both copies of a certain gene were <t>knocked out</t>, benign polyps would develop. If both copies of a second gene were then deleted, the polyps would progress to malignancy.

Candidate senses:
1. sense_key=knock_out%2:30:01:: | definition=eliminate | examples=knock out a target
2. sense_key=knock_out%2:35:00:: | definition=knock unconscious or senseless | synonyms=knock cold, kayo | examples=the boxing champion knocked out his opponent in a few seconds
3. sense_key=knock_out%2:30:00:: | definition=destroy or break forcefully | examples=The windows were knocked out
4. sense_key=knock_out%2:37:00:: | definition=overwhelm with admiration | examples=All the guys were knocked out by her charm
5. sense_key=knock_out%2:30:02:: | definition=empty (as of tobacco) by knocking out | examples=knocked out a pipe

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for "knocked out" in the given context, let's analyze the sentence and the provided candidate senses.

The context is about genetic research into cancer development, specifically how certain genes, when altered or "knocked out," contribute to the progression from benign polyps to malignant cancer cells. The phrase "If both copies of a certain gene were knocked out, benign polyps would develop" suggests that the gene in question is being inactivated or disabled.

Let's examine the candidate senses:

1. **Eliminate** - This sense fits the context as it implies making something (in this case, a gene) non-functional or inoperative.
2. **Knock unconscious or senseless** - This is a literal, physical interpretation that doesn't fit the genetic context.
3. **Destroy or break forcefully** - While this could metaphorically apply to genes being "broken," it's more about physical destruction than the specific genetic context of inactivation.
4. **Overwhelm with admiration** - This sense is unrelated to the context of genetic research.
5. **Empty (as of tobacco) by knocking out** - This is a specific action related to pipes or containers and doesn't fit the context.

The context is discussing genes being made non-functional, which aligns with the idea of "eliminating" their function. The most appropriate sense is thus related to making something (a gene, in this case) non-functional.

The best sense is **1. eliminate**, as it matches the context of making a gene non-functional.

{"sense_index": 1}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: polyp
Target surface form: polyps
Context:
He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both copies of a certain gene were knocked out, benign <t>polyps</t> would develop. If both copies of a second gene were then deleted, the polyps would progress to malignancy.

Candidate senses:
1. sense_key=polyp%1:26:00:: | definition=a small vascular growth on the surface of a mucous membrane | synonyms=polypus
2. sense_key=polyp%1:05:00:: | definition=one of two forms that coelenterates take (e.g. a hydra or coral): usually sedentary with a hollow cylindrical body usually with a ring of tentacles around the mouth | examples=in some species of coelenterate, polyps are a phase in the life cycle that alternates with a medusoid phase

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the correct sense of the word "polyps" in the given context, let's analyze the information provided.

1. **Context Analysis**: The passage discusses the development of colon cancer and its relation to the formation of polyps in the bowel. It mentions that these polyps can become malignant over time, indicating a pathological condition within the human body, specifically related to the bowel or colon.

2. **Candidate Senses**:
   - **Sense 1**: Refers to "a small vascular growth on the surface of a mucous membrane." This definition aligns with the medical context of polyps being related to the bowel and potentially becoming malignant.
   - **Sense 2**: Describes a form that coelenterates (like hydra or coral) take, characterized by a sedentary, hollow, cylindrical body with a ring of tentacles around the mouth. This is more related to marine biology.

3. **Relevance to Context**: The passage is discussing human health, specifically the development of colon cancer and the role of polyps in this process. The context is medical and related to human pathology rather than marine biology.

4. **Decision**:
   - The first sense ("a small vascular growth on the surface of a mucous membrane") is directly relevant to the context of bowel polyps and their potential to become malignant, fitting the discussion about colon cancer.
   - The second sense (related to coelenterates) does not fit the context as it pertains to a completely different field (marine biology) and does not relate to human pathology or disease.

5. **Conclusion**: The correct sense of "polyps" in the given context is the first one, as it relates to a medical condition involving growths on mucous membranes, such as those found in the bowel.

Therefore, the best indexed sense for "polyps" is: {"sense_index": 1}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: develop
Target surface form: develop
Context:
He believed colon cancer might also arise from multiple "hits "on cancer suppressor genes, because it often seems to develop in stages. It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both copies of a certain gene were knocked out, benign polyps would <t>develop</t>. If both copies of a second gene were then deleted, the polyps would progress to malignancy.

Candidate senses:
1. sense_key=develop%2:36:01:: | definition=make something new, such as a product or a mental or artistic creation | examples=Her company developed a new kind of building material that withstands all kinds of weather; They developed a new technique
2. sense_key=develop%2:36:00:: | definition=work out | synonyms=evolve, germinate | examples=We have developed a new theory of evolution
3. sense_key=develop%2:30:06:: | definition=gain through experience | synonyms=acquire, evolve | examples=I acquired a strong aversion to television; Children must develop a sense of right and wrong
4. sense_key=develop%2:29:00:: | definition=come to have or undergo a change of (physical features and attributes) | synonyms=grow, produce, get, acquire | examples=He grew a beard; The patient developed abdominal pains
5. sense_key=develop%2:42:00:: | definition=come into existence; take on form or shape | synonyms=originate, arise, rise, uprise, spring up, grow | examples=A new religious movement originated in that country; a love that sprang up from friendship
6. sense_key=develop%2:30:04:: | definition=change the use of and make available or usable | synonyms=build up | examples=develop land; The country developed its natural resources
7. sense_key=develop%2:32:00:: | definition=elaborate, as of theories and hypotheses | synonyms=explicate, formulate | examples=Could you develop the ideas in your thesis
8. sense_key=develop%2:31:00:: | definition=create by training and teaching | synonyms=train, prepare, educate | examples=The old master is training world-class violinists; we develop the leaders for the future
9. sense_key=develop%2:30:05:: | definition=be gradually disclosed or unfolded; become manifest | examples=The plot developed slowly
10. sense_key=develop%2:30:00:: | definition=grow, progress, unfold, or evolve through a process of evolution, natural growth, differentiation, or a conducive environment | examples=A flower developed on the branch; The country developed into a mighty superpower
11. sense_key=develop%2:30:09:: | definition=become technologically advanced | synonyms=modernize, modernise | examples=Many countries in Asia are now developing at a very fast pace; Viet Nam is modernizing rapidly
12. sense_key=develop%2:30:01:: | definition=cause to grow and differentiate in ways conforming to its natural development | synonyms=make grow | examples=The perfect climate here develops the grain; He developed a new kind of apple
13. sense_key=develop%2:36:09:: | definition=generate gradually | examples=We must develop more potential customers; develop a market for the new mobile phone
14. sense_key=develop%2:30:10:: | definition=grow emotionally or mature | synonyms=grow | examples=The child developed beautifully in her new kindergarten; When he spent a summer at camp, the boy grew noticeably and no longer showed some of his old adolescent behavior
15. sense_key=develop%2:39:00:: | definition=make visible by means of chemical solutions | examples=Please develop this roll of film for me
16. sense_key=develop%2:35:04:: | definition=superimpose a three-dimensional surface on a plane without stretching, in geometry
17. sense_key=develop%2:33:03:: | definition=move one's pieces into strategically more advantageous positions | examples=Spassky developed quickly
18. sense_key=develop%2:33:02:: | definition=move into a strategically more advantageous position | examples=develop the rook
19. sense_key=develop%2:30:13:: | definition=elaborate by the unfolding of a musical idea and by the working out of the rhythmic and harmonic changes in the theme | examples=develop the melody and change the key
20. sense_key=develop%2:30:03:: | definition=happen | synonyms=break, recrudesce | examples=Report the news as it develops; These political movements recrudesce from time to time
21. sense_key=develop%2:30:12:: | definition=expand in the form of a series | examples=Develop the function in the following form

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "develop" in the given context, let's analyze the context and the provided candidate senses.

The context discusses the development of cancer, specifically how it arises from genetic damage and progresses through stages, starting from benign polyps to malignancy. The sentence with the target word is: "If both copies of a certain gene were knocked out, benign polyps would develop."

Let's examine the relevant candidate senses:

1. "make something new, such as a product or a mental or artistic creation" - This doesn't directly relate to the context of cancer or polyps developing.
2. "work out" - Not directly relevant as it implies a process of solving or creating something through effort.
3. "gain through experience" - Not relevant as it pertains to acquiring something through experience, not applicable to polyps.
4. "come to have or undergo a change of (physical features and attributes)" - This is a plausible sense as it involves a change in physical attributes, such as growing or acquiring a new feature.
5. "come into existence; take on form or shape" - This sense is highly relevant as it involves something coming into being or taking shape, which aligns with the idea of polyps forming or developing.
6. Other senses relate to developing theories, resources, or skills, which are not directly relevant to the context.

Given the context, the most appropriate sense is related to something coming into existence or changing physically. Between senses 4 and 5, sense 5 ("come into existence; take on form or shape") is more appropriate because it directly relates to the formation or emergence of polyps.

The best indexed sense for "develop" in this context corresponds to sense 5.

{"sense_index": 5}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: copy
Target surface form: copies
Context:
It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both copies of a certain gene were knocked out, benign polyps would develop. If both <t>copies</t> of a second gene were then deleted, the polyps would progress to malignancy. It was clear that more than one gene had to be damaged for colon cancer to develop.

Candidate senses:
1. sense_key=copy%1:10:00:: | definition=a reproduction of a written record (e.g. of a legal or school record) | synonyms=transcript
2. sense_key=copy%1:06:00:: | definition=a thing made to be similar or identical to another thing | examples=she made a copy of the designer dress; the clone was a copy of its ancestor
3. sense_key=copy%1:10:01:: | definition=matter to be printed; exclusive of graphical materials | synonyms=written matter
4. sense_key=copy%1:10:02:: | definition=material suitable for a journalistic account | examples=catastrophes make good copy

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: second
Target surface form: second
Context:
It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both copies of a certain gene were knocked out, benign polyps would develop. If both copies of a <t>second</t> gene were then deleted, the polyps would progress to malignancy. It was clear that more than one gene had to be damaged for colon cancer to develop.

Candidate senses:
1. sense_key=second%5:00:00:ordinal:00 | definition=coming next after the first in position in space or time or degree or magnitude | synonyms=2nd, 2d
2. sense_key=second%3:00:00:: | definition=a part or voice or instrument or orchestra section lower in pitch than or subordinate to the first | examples=second flute; the second violins

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "second" in the given context, let's analyze the information provided.

The context discusses genetic damage and the development of colon cancer, specifically mentioning the role of different genes in the progression from benign polyps to malignancy. The sentence where "second" appears is: "If both copies of a certain gene were knocked out, benign polyps would develop. If both copies of a second gene were then deleted, the polyps would progress to malignancy."

Here, "second" is used to indicate that there is another gene, different from the first one mentioned, which, when its copies are deleted, leads to the progression of polyps to malignancy. The use of "second" in this context implies a sequence or order, indicating that this gene is considered after or in addition to the first gene mentioned.

Let's examine the candidate senses:

1. The first sense is defined as "coming next after the first in position in space or time or degree or magnitude" with synonyms "2nd" and "2d". This definition aligns with the usage in the context, where "second gene" refers to a gene that is considered after the first gene in a sequence of genetic alterations leading to malignancy.

2. The second sense refers to "a part or voice or instrument or orchestra section lower in pitch than or subordinate to the first" with examples like "second flute; the second violins". This definition is related to music and does not fit the context of genetic discussion.

Given the context and the definitions provided, the usage of "second" to denote a gene that is considered after the first one in a sequence clearly aligns with the first sense, which is about ordinal positioning.

Therefore, the best indexed sense for "second" in the given context is the first one.

{"sense_index": 1}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: then
Target surface form: then
Context:
It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both copies of a certain gene were knocked out, benign polyps would develop. If both copies of a second gene were <t>then</t> deleted, the polyps would progress to malignancy. It was clear that more than one gene had to be damaged for colon cancer to develop.

Candidate senses:
1. sense_key=then%4:02:00:: | definition=subsequently or soon afterward (often used as sentence connectors) | synonyms=so, and so, and then | examples=then he left; go left first, then right
2. sense_key=then%4:02:02:: | definition=in that case or as a consequence | examples=if he didn't take it, then who did?; keep it then if you want to
3. sense_key=then%4:02:01:: | definition=at that time | examples=I was young then; prices were lower back then

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "then" in the given context, let's analyze the sentence and the provided candidate senses.

The sentence is: "If both copies of a second gene were then deleted, the polyps would progress to malignancy."

1. The first sense suggests "subsequently or soon afterward" and is often used as sentence connectors. The examples given are "then he left; go left first, then right." This sense fits well with the context of a sequence of events happening one after another.

2. The second sense is defined as "in that case or as a consequence" with examples like "if he didn't take it, then who did?; keep it then if you want to." This sense is used to indicate a consequence or an alternative based on a condition.

3. The third sense refers to "at that time" as seen in "I was young then; prices were lower back then." This sense is about indicating a specific point or period in the past.

Given the context, the sentence discusses a sequence of genetic events leading to malignancy. The word "then" is used in the sentence "If both copies of a second gene were then deleted, the polyps would progress to malignancy." Here, "then" indicates a subsequent action or event following the first condition (the deletion of the first gene). The use of "if" followed by "then" is a common construction indicating a conditional sequence or consequence.

The best fit for "then" in this context is the first sense, as it indicates a subsequent event or action in a sequence. The sentence implies that after the first gene is knocked out (leading to benign polyps), the deletion of a second gene happens subsequently, leading to malignancy.

Therefore, the best indexed sense for "then" is the first one.

{"sense_index": 1}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: delete
Target surface form: deleted
Context:
It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both copies of a certain gene were knocked out, benign polyps would develop. If both copies of a second gene were then <t>deleted</t>, the polyps would progress to malignancy. It was clear that more than one gene had to be damaged for colon cancer to develop.

Candidate senses:
1. sense_key=delete%2:35:00:: | definition=remove or make invisible | synonyms=cancel | examples=Please delete my name from your list
2. sense_key=delete%2:32:00:: | definition=wipe out digitally or magnetically recorded information | synonyms=erase | examples=Who erased the files form my hard disk?
3. sense_key=delete%2:30:00:: | definition=cut or eliminate | synonyms=edit, blue-pencil | examples=she edited the juiciest scenes

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "deleted" in the given context, let's analyze the context and the provided candidate senses.

The context discusses genetic damage and the development of cancer, specifically mentioning the process of genes being "knocked out" or "deleted" and how this relates to the progression from benign polyps to malignancy. The term "deleted" here refers to the removal or inactivation of genes, which is a biological process rather than a direct reference to digital or magnetic data.

Let's examine the candidate senses:

1. The first sense is defined as "remove or make invisible" with synonyms like "cancel" and an example of deleting a name from a list. This sense is broad and could potentially apply to the removal or inactivation of genes.
2. The second sense refers to "wipe out digitally or magnetically recorded information" with a synonym "erase" and an example related to erasing files from a hard disk. This sense is more specific to digital or magnetic data, which doesn't directly relate to the biological context provided.
3. The third sense is "cut or eliminate" with synonyms "edit, blue-pencil" and an example of editing scenes. While this involves removal or elimination, it's more related to the context of editing content, like in writing or film.

Given the context is about genetic damage and the development of cancer, the term "deleted" is used to describe the inactivation or removal of genes. The most relevant sense here is the first one, as it involves the concept of removal. Although the context is biological, the closest sense provided is the first one, as it broadly encompasses the idea of removal or inactivation.

Therefore, the best indexed sense for "deleted" in this context is the first sense.

{"sense_index": 1}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: polyp
Target surface form: polyps
Context:
It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both copies of a certain gene were knocked out, benign polyps would develop. If both copies of a second gene were then deleted, the <t>polyps</t> would progress to malignancy. It was clear that more than one gene had to be damaged for colon cancer to develop.

Candidate senses:
1. sense_key=polyp%1:26:00:: | definition=a small vascular growth on the surface of a mucous membrane | synonyms=polypus
2. sense_key=polyp%1:05:00:: | definition=one of two forms that coelenterates take (e.g. a hydra or coral): usually sedentary with a hollow cylindrical body usually with a ring of tentacles around the mouth | examples=in some species of coelenterate, polyps are a phase in the life cycle that alternates with a medusoid phase

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: malignancy
Target surface form: malignancy
Context:
It often is preceded by the development of polyps in the bowel, which in some cases become increasingly malignant in identifiable stages -- progressing from less severe to deadly -- as though a cascade of genetic damage might be occurring. Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both copies of a certain gene were knocked out, benign polyps would develop. If both copies of a second gene were then deleted, the polyps would progress to <t>malignancy</t>. It was clear that more than one gene had to be damaged for colon cancer to develop.

Candidate senses:
1. sense_key=malignancy%1:26:00:: | definition=(medicine) a malignant state; progressive and resistant to treatment and tending to cause death | synonyms=malignance
2. sense_key=malignancy%1:07:00:: | definition=quality of being disposed to evil; intense ill will | synonyms=malignity, malignance

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.

raw_output:
To determine the best indexed sense for the target word "malignancy" in the given context, let's analyze the information provided.

1. **Context Analysis**: The passage discusses the development of cancer, specifically colon cancer, and the genetic factors involved in its progression. It mentions the development of polyps, their potential to become malignant, and the genetic damage associated with this process.

2. **Target Word Context**: The word "malignancy" is used in the sentence, "If both copies of a second gene were then deleted, the polyps would progress to malignancy." This indicates that "malignancy" refers to a state or condition related to cancer or malignant cells.

3. **Candidate Senses Analysis**:
   - **Sense 1**: Refers to "(medicine) a malignant state; progressive and resistant to treatment and tending to cause death" with synonyms "malignance." This definition directly relates to the medical context of cancer and malignant conditions.
   - **Sense 2**: Refers to "quality of being disposed to evil; intense ill will" with synonyms "malignity, malignance." This definition pertains to a negative disposition or ill will, not directly related to a medical condition.

4. **Choosing the Best Indexed Sense**:
   - The context is clearly medical, discussing cancer development and genetic factors.
   - The use of "malignancy" is directly related to the progression of polyps to a malignant state, which is a medical condition.
   - The first sense directly corresponds to this context, as it defines "malignancy" in terms of a malignant medical state.

Given the context and the definitions provided, the best indexed sense for "malignancy" is the one related to a malignant medical state.

{"sense_index": 1}


[System] You are an English linguist performing fine-grained Word Sense Disambiguation. WordNet glosses are schematic. Use the sentence context, the examples, and the synonyms to choose the best indexed sense. Do not hedge. Choose the single best indexed sense.

[User]
Target lemma: clear
Target surface form: clear
Context:
Dr. Vogelstein and a doctoral student, Eric Fearon, began months of tedious and often frustrating probing of the chromosomes searching for signs of genetic damage. They began uncovering a confusing variety of genetic deletions, some existing only in benign polyps, others in malignant cells and many in both polyps and malignant cells. Gradually, a coherent picture of cancer development emerged. If both copies of a certain gene were knocked out, benign polyps would develop. If both copies of a second gene were then deleted, the polyps would progress to malignancy. It was <t>clear</t> that more than one gene had to be damaged for colon cancer to develop. Their report galvanized other molecular biologists.

Candidate senses:
1. sense_key=clear%3:00:00:: | definition=readily apparent to the mind | examples=a clear and present danger; a clear explanation
2. sense_key=clear%5:00:00:clearheaded:00 | definition=free from confusion or doubt | examples=a complex problem requiring a clear head; not clear about what is expected of us
3. sense_key=clear%5:00:00:unobstructed:00 | definition=affording free passage or view | synonyms=open | examples=a clear view; a clear path to victory
4. sense_key=clear%3:00:02:: | definition=allowing light to pass through | examples=clear water; clear plastic bags
5. sense_key=clear%5:00:02:free:00 | definition=free from contact or proximity or connection | examples=we were clear of the danger; the ship was clear of the reef
6. sense_key=clear%5:00:00:untroubled:00 | definition=characterized by freedom from troubling thoughts (especially guilt) | examples=a clear conscience; regarded her questioner with clear untroubled eyes
7. sense_key=clear%5:00:01:pure:02 | definition=(of sound or color) free from anything that dulls or dims | synonyms=clean, light, unclouded | examples=efforts to obtain a clean bass in orchestral recordings; clear laughter like a waterfall
8. sense_key=clear%5:00:00:unencumbered:00 | definition=(especially of a title) free from any encumbrance or limitation that presents a question of fact or law | synonyms=unmortgaged | examples=I have clear title to this property
9. sense_key=clear%5:00:00:distinct:00 | definition=clear and distinct to the senses; easily perceptible | synonyms=clean-cut, clear-cut | examples=as clear as a whistle; clear footprints in the snow
10. sense_key=clear%3:00:04:: | definition=accurately stated or described | synonyms=well-defined | examples=a set of well-defined values
11. sense_key=clear%3:00:03:: | definition=free from clouds or mist or haze | examples=on a clear day
12. sense_key=clear%5:00:00:unqualified:02 | definition=free of restrictions or qualifications | synonyms=clean | examples=a clean bill of health; a clear winner
13. sense_key=clear%5:00:00:perfect:00 | definition=free from flaw or blemish or impurity | examples=a clear perfect diamond; the clear complexion of a healthy young woman
14. sense_key=clear%5:00:00:net:00 | definition=clear of charges or deductions | examples=a clear profit
15. sense_key=clear%5:00:00:legible:00 | definition=easily deciphered | synonyms=decipherable, readable
16. sense_key=clear%5:00:00:innocent:00 | definition=freed from any question of guilt | synonyms=absolved, cleared, exculpated, exonerated, vindicated | examples=is absolved from all blame; was now clear of the charge of cowardice
17. sense_key=clear%5:00:00:discerning:00 | definition=characterized by ease and quickness in perceiving | synonyms=percipient | examples=clear mind; a percipient author

Instructions:
1. Choose the single best indexed sense for the target word in context.
2. WordNet glosses are schematic; use the context, synonyms, and examples together.
3. Do not answer with a WordNet sense key.
4. Return only a JSON object exactly like {"sense_index": 3}.